PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 523aa    MW: 58777.2 Da    PI: 7.8704
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00100genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05111133123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C+k F r  nL+ H r H
  AA26G00100 111 FVCEICNKGFQRDQNLQLHRRGH 133
                 89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-5110133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.68E-6110133No hitNo description
PROSITE profilePS5015710.949111133IPR007087Zinc finger, C2H2
SMARTSM003550.017111133IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SMARTSM00355170153183IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.68E-6183208No hitNo description
SMARTSM00355230188208IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MNKDMLLHHQ NNHQNNNNNQ QQEENMSNLT STASGDQTSV NSSGNRTEAS GSNYFPLNNI  60
NQQHQEQEQE HFFVQESLQP QKKRRNQPGN PDPESEVIAL SPKTLMATNR FVCEICNKGF  120
QRDQNLQLHR RGHNLPWKLK QRSNKEVIRK KVYVCPEPNC VHHEASRALG DLTGIKKHFC  180
RKHGEKKWKC DKCSKKYAVL SDCKAHSKTC GTKEYRCDCG TLFSRRDSFI THRAFCEALA  240
EESAREVITP NHQKQHHDDH HQHHDHDQTQ PNINVSSSST SQNIINFQST NNNDGNNTSH  300
HHHSFTMKQE QQTNDHHHHH HNHDHMINYN TIPPWLAPPP QSSDCFPHTS SNPNPNVRTT  360
PSLFSHQHQH HHSPAPAIAA TALLQKAAQM GPTKSNPLPP SSSSHHHNNL TTTMAAMMTS  420
SSSNNLGLFH QDHYAFDQNG SGESFDDTFG GFLRTTNANA TATNASNAGD TNNKNGGSGG  480
EGLTRDFLGL RPLMSHNEIL SFADLGNCIN TSAPNHSQKP WQG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137150KLKQRSNKEVIRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00355DAPTransfer from AT3G13810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501294.10.0PREDICTED: zinc finger protein NUTCRACKER-like isoform X4
RefseqXP_010501280.10.0PREDICTED: zinc finger protein NUTCRACKER-like isoform X2
RefseqXP_010501275.10.0PREDICTED: zinc finger protein NUTCRACKER-like isoform X1
RefseqXP_010501269.10.0PREDICTED: zinc finger protein NUTCRACKER-like isoform X1
RefseqXP_010501262.10.0PREDICTED: zinc finger protein NUTCRACKER-like isoform X1
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLV4LDU40.0V4LDU4_EUTSA; Uncharacterized protein
STRINGBra021510.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.11e-121indeterminate(ID)-domain 11